[Katia Basso at Columbia University – Transcription Factor ChIP-seq with 10 times less input]
• TF ChIP-seq using 10 times less input than a standard ChIP-seq
• High reproducibility of transcription factor ChIP-seq from only 1,000,000 cells
• The simplicity of the 3-step MicroPlex Kit protocol with NO intermediate purifications
• Walk away automation with the IP-Star®
BCL6 binding on CD69 promoter. B cell lymphoma cell line P3HR1 was crosslinked and then sonicated using the Bioruptor® Pico. ChIP was performed on the IP-Star® Automation instrument. The MicroPlex v2 Kit from Diagenode was used for library preparation. The plots represent raw reads, the squares below the plots mark the significantly enriched peaks (according to the peak call software). Red box: peak regions that have been previously demonstrated by independent assays to be enriched for BCL6 binding. Data courtesy of Katia Basso, Columbia University, New York.
ChIPmentation >
Chromatin immunoprecipitation (ChIP) >
Methylated DNA Immunoprecipitation (MeDIP) >
Hydroxymethylated DNA Immunoprecipitation (hMeDIP) >
Methyl-binding domain protein capture assays (MethylCap) >
Sequential ChIP (Re-ChIP) >
Bisulfite conversion >
DNA purification (IPure) >
Library preparation for Next generation sequencing (NGS) platforms >